DB uniprot_srs [
        type: P
        method: srswww
        format: swiss
        url: "http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz"
        dbalias: "uniprot"
        fields: "id acc"
        comment: "UniProt using srs.ebi.ac.uk"
]

DB uniprot [
        type: P
        comment: "UniProtKB"
        methodquery: srswww
        format: swiss
        url: "http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz"
        dbalias: "uniprot"
        fields: "id acc sv"
        methodall: direct
        formatall: fasta
        dir: /ebi/services/idata/latest/fastadb/
        file: uniprot
]


DB swissprot_sanger
[ 
    type: P method: url format: swiss
    url: "http://srs.sanger.ac.uk/srs7bin/cgi-bin/wgetz?-ascii+-e+[swissprot:'%s']"
    comment: "Swissprot via Sanger SRS" 
]

DB swissprot
[
    type: P method: url format: swiss
    url: "http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-ascii+-e+[swissprot-id:'%s']|[swissprot-acc:'%s']"
    comment: "Swissprot via Sanger SRS"
]


DB zuniprot [ 
methodquery: srswww
format: swiss
type: P
fields: "id acc sv des key org"
dbalias: uniprot
url: "http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-lv+5"
comment: "uniprot/swiss via srswww"
]


DB embl___ [
        type: N
        method: srswww
        format: embl
        url: "http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz"
        dbalias: "embl"
        fields: "id acc"
        comment: "EMBL using srs.ebi.ac.uk"
]

DB embl__sanger 
[ 
    type: N method: url format: embl
    url: "http://srs.sanger.ac.uk/srs7bin/cgi-bin/wgetz?-ascii+-e+[embl:'%s']"
    comment: "EMBL via Sanger SRS" 
]



DB urldbfetch [ type: N methodentry: url format: embl
  url: http://www.ebi.ac.uk/cgi-bin/dbfetch?db=embl&id=%s&style=raw
]
##SET EMBOSS_PROXY www-proxy.ebi.ac.uk:3128

DB urldbfetchall [ type: N method: url format: embl
  url: http://www.ebi.ac.uk/cgi-bin/dbfetch?db=embl&id=%s&style=raw
]
DB embl_ [
# required parameters
    method: "url"
    format: "embl"
    type: "N"
    url: 
"http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-noSession+-ascii+-vn+2+-e+[embl-id:%s]|[embl-acc:%s]|([emblidacc-id:%s]>embl)"
#optional parameters
    comment: "EMBL from SRS inc old IDs"
]


DB embl [
        type: N
        method: url
        format: embl
        url: "http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-noSession+-ascii+-vn+2+-e+[embl-id:%s]|[embl-acc:%s]|([emblidacc-id:%s]>embl)"
        dbalias: "embl"
        fields: "id acc"
        comment: "EMBL using srs.ebi.ac.uk, recognizes old EMBL ids"
]

DB testdbfetch [ type: N method: dbfetch format: embl dbalias: embl
               url: http://www.ebi.ac.uk/ws/services/Dbfetch ]

DB dbfetchembl [ type: N
                 comment: "EMBL dbfetch"
                 methodentry: dbfetch
                 dbalias: embl
                 format: embl
                 url: "http://www.ebi.ac.uk/cgi-bin/dbfetch"
]


# This is only here because EMBOSS Tutorial has swallid,
# database is UniProt
DB swallid [
        type: P
        method: srswww
        format: swiss
        url: "http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz"
        dbalias: "uniprot"
        fields: "id acc"
        comment: "UniProt using srs.ebi.ac.uk"
]